Dataset
Browse assemblies, datasets, and related metadata used in the study included in the mango pangenome.
Sequencing Overview
Click a dataset to view cultivar composition.
Assembly Summary (reference cultivars)
| Feature | Alphonso GCF_011075055.1 | Amrapali GCA_020138855.1 | Neelam GCA_021014495.1 | Dashehari GCA_021014955.1 |
|---|---|---|---|---|
| Genome size | 392 Mb | 411.3 Mb | 370.6 Mb | 368.8 Mb |
| Total ungapped length | 391.9 Mb | 410.5 Mb | 369.3 Mb | 367.3 Mb |
| Chromosomes | 20 | 20 | 20 | 20 |
| Scaffolds | 250 | 3,106 | 2,293 | 2,247 |
| Scaffold N50 | 17.7 Mb | 12.1 Mb | 18.2 Mb | 18.1 Mb |
| Contigs | 419 | 3,714 | 3,776 | 3,861 |
| Contig N50 | 3.6 Mb | 978.6 kb | 676.6 kb | 515.5 kb |
| GC % | 32.5% | 32.5% | 32.5% | 33% |
| Coverage | 240× | 289.6× | 50× | 51× |
| Assembly level | Chromosome | Chromosome | Chromosome | Chromosome |
| Date (assembly) | Mar 10, 2020 | Oct 5, 2021 | Nov 30, 2021 | Nov 30, 2021 |
| Submitter | BIG, CAS (China) | ICAR-NRCPB (India) | ICAR-NIPB (India) | ICAR-NIPB (India) |